Created attachment 239963 [details]
.cpp and .cfg files to illustrate the problem.

In the 20130324 SVN, the use of conditionals cause members outside the conditionals to be omitted from the output documentation.
In the test case attached, the use of @cond OMIT / @endcond causes all of the group function members after the @endcond to be missing, only func and funcA get documented. funcB, funcC, func2 and func3 are all missing (although the text for them shows up) and @refs to funcB fail with the wrong line number.